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Pumpkin Cheese Stuffed Shells Bolognese Bake…the perfect warming dinner to welcome the start of autumn. It’s the coziest pumpkin pasta bake! Jumbo pasta shells stuffed with pumpkin, cheese, and fresh sage. Then baked in a spicy Bolognese style red sauce that’s saucy, a touch spicy, creamy, and so delicious! This is a great fall pasta to serve any night of the week, or for your next gathering with family or friends.

And just like that, we have our very first pumpkin recipe of the fall season! Did I think the first pumpkin recipe would be a savory one? No, but it’s ok because we have something sweet coming tomorrow. You guys, I am so excited it’s fall!
I touched on this a bit yesterday, but this fall feels even more special than years past. I think we can all agree that this year has been weird, to say the least. It started out amazing with the HBH Super Simple cookbook tour still going strong and then things just, ahh…went weird. And at times definitely difficult. But hopefully we’re all making it through. And because of the very bizarre year we’ve had, this fall just feels like it’s going to be good.
I’m excited to actually be home this fall and not traveling from one place to the next. Sure I love a busy fall travel season, but I can also love a fall cozied-up at home even more. So you see, my mind is full of so many cozy fall recipes…including plenty of new pumpkin recipes.
And it’s all starts with this bolognese bake.

Oh, this bake. It started out as something completely different, but somehow, someway, my mind turned it into this delicious bake you’re looking at today.
Originally there was no pumpkin, no pasta shell noodles, and instead, there was really just Bolognese sauce baked with pasta. But guys, this felt boring. It needed something more. Something to make it special enough for this time of year (yes, I’m cheesy, go with me on this). So then I kept thinking…and thinking. Once I really start to think on a recipe, there’s just no stopping my brain.

I toss around idea after idea until I land on something I LOVE.
After a good amount of thinking, I finally came to this bake. It’s nothing close to your average pasta bake, but it sure is delicious.

This one is simple. But you do need some time to allow the sauce to simmer, and then for the pasta to bake. No more than an hour though, so this still makes for a great weeknight dinner.
To start, make the spicy, saucy, creamy, Bolognese sauce. This sauce is so good. Actually, in my dad’s words, “THIS SAUCE IS SO GOOD”. That’s coming from a man who’s constantly telling me he does not like meat sauces. So you should know…this one is special. It’s a simple mix of ground chicken (or ground beef), herbs, and spices. The key is to use a touch of fennel seeds and a bit of smoky paprika to really add some flavor. Next toss in some jarred tomatoes and a splash of white wine. Then let the sauce simmer for a bit to thicken up.

While the sauce simmers, make the stuffed shells. These sells are almost too good…warming pumpkin, fontina cheese, and fresh chopped sage. All stuffed into a pasta shell. Nothing not to love here.
I also added a little crumbled blue cheese, which I love. But if you’re one of those people who despise blue cheese, just omit it.
Ok, next, snuggle the pumpkin stuffed shells right into the Bolognese sauce, then top with provolone, and bake until the pasta is golden and the cheese has melted.
Hello to cheesy, pumpkiny pasta perfection.

This is one of the best dishes to come out of my kitchen as of late. That is a bold statement, but you guys, these stuffed shells are the perfect fall comfort food. Every last bite is a delicious one. My whole family really loved this meal.
I know it may seem a little odd to use pumpkin in such a savory way, but go with me on this one. The pumpkin lends a creaminess to the stuffed shells while providing a hint of both sweetness and autumn flavors. And when paired with that hearty Bolognese sauce?
Beyond delicious! Please give this one a try! You’ll love it, and your family will love you for making it!

Looking for other fall pasta recipes? Here are a few ideas:
Pumpkin Cauliflower Gnocchi with Nutty Browned Butter and Whipped Ricotta
Butternut Squash Pasta Carbonara with Rosemary Bacon
Slow Cooker Red Wine Sunday Ragù Pasta
Brown Butter Brussels Sprout and Bacon Ravioli
Lastly, if you make this pumpkin cheese stuffed pasta shell bolognese bake, be sure to leave a comment and/or give this recipe a rating! Above all, I love to hear from you guys and always do my best to respond to each and every comment. And of course, if you do make this recipe, don’t forget to tag me on Instagram! Looking through the photos of recipes you all have made is my favorite!
Nutritional information is only an estimate. The accuracy of the nutritional information for any recipe on this site is not guaranteed.

This was fabulous! I made the recipe without any changes and it was perfect. The pumpkin was so much lighter than a traditional stuffed shell. This recipe is a keeper!
That is so amazing to hear! Thank you so much for trying this recipe, Liz! xTieghan
Hi, can I use butternut squash instead of pumpkin? 🙂
Hey Sarah,
Sure that would be great! I hope you love the recipe, please let me know if you have any other questions! xTieghan
We made this last night and it is absolutely scrumptious! Perfect fall dish! I loved how the sage, pumpkin, and blue cheese all melted together, so delicious. Planning on making another batch to have ready in the freezer. Thanks Tieghan!
Yes!! So happy this recipe turned out so well for you Lauren! Thank you so much! xTieghan
Having a hard time finding canned pumpkin around here. Do you think canned sweet potato would be tasty enough?
Hey Ralph,
Sure, I think that would be a great substitute. I hope you love the recipe, please let me know if you have any other questions! xTieghan
Super excited to try this!
Question- can I make through to step 5 and freeze?
Thanks!! ❤️
Hey Melissa,
Yes, that will work! I hope you love the recipe, please let me know if you have any other questions! xTieghan
Anyone have any recommendations for a substitute cheese?
Hey Laura,
I would use a dairy free cheese. I hope you love the recipe, please let me know if you have any other questions! xTieghan
Looks delicious! However, I would like to use fresh pumpkins. I presume I would need to precook them and perhaps just mash them? 🙂
Hey Cecilie,
Yes you would just want to make your own pumpkin puree. I hope you love the recipe, please let me know if you have any other questions! xTieghan
Thank you for this amazing recipe, Tieghan! I’m definitely going to give it a try! I was wondering: what is the size of your baking dish?
Thank you again
Hey Jessie,
I used a 9×13 baking dish. I hope you love the recipe, please let me know if you have any other questions! xTieghan
Am I using jarred marinara sauce or canned tomatoes with the wine and milk?
Hey Vikki,
You are using jarred tomato sauce. Let me know if you have other questions. Hope you love the recipe. Thank you! xTieghan
You list Marinara sauce as an ingredient, and refer to “tomatoes “ in instructions. Same thing?
Hey Susan,
Yes that is correct. Let me know if you have other questions. Hope you love the recipe. Thank you! xTieghan
I have leftover monchego cheese from one of your other recipes is it possible to substitute that for either the fontina or the provolone?
Hey Kathy,
Yes, that would be so good! Let me know if you have other questions. Hope you love the recipe. Thank you! xTieghan
This looks right up my alley … yummy and cozy. However, I am wondering about substituting a 29 oz can of crushed tomato puree for the jarred marinara sauce and perhaps increasing the wine a bit to compensate … just not a fan of jarred marinara. Tieghan, I’d love your thoughts on this. Thank you.
Hey Patricia,
Sure I think that would be a great idea! Let me know if you have other questions. Hope you love the recipe. Thank you! xTieghan
This may be just what I need to cheer me up….what a dreadful year. Thanks again for your inspiration Tieghan.Can’t wait to try this. You are a jewel.
You are too sweet! I am really glad you like this one and I hope it turns out amazing for you! xTieghan
oh yum, this is so my kind of comfort dish!
I am so happy you like this one, Ruth! xTieghan
This looks amazing and delicious! I think it is going to be one of my dinners this week! Thank you for the recipe. I really want to see Stuffed Cannelloni from you! Is it possible in near future???
Thank you so much Helena! I hope this turns out amazing for you!! xTieghan