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Chocolate Bourbon Pecan Pie Cupcakes with Butter Pecan Frosting.…pecan pie, but in cupcake form and so good. Extra chocolatey cupcakes made with warming bourbon and generously stuffed with gooey pecan pie “filling”. Each cake is frosted with the most delicious creamy brown sugar frosting and finished off with a sprinkling of cinnamon-spiced brown sugar pecans. Sooo much to love here! You can’t beat these cute little bite-size pecan pie cupcakes. They’ll be the hit of your Thanksgiving desserts!

Happy last Friday before Thanksgiving guys!! This week was a lot, and of course, took some unexpected turns. But the good news is that we have so much to look forward to in the coming days. And the best cupcakes to bake up this weekend.
I’m excited, and looking forward to a very low key holiday and a good amount of pie. Or pie cupcakes actually!
So…pecan pie? How do you guys feel about it? Do you love it or would you prefer pumpkin pie? With my family, any kind of chocolate pie is much preferred. We do have a few oddballs that love a pumpkin pie. But the majority of the fam always go for the chocolate.
Personally, I am a pecan pie lover all the way. It’s what I grew up on, and also what I look forward to every holiday season. My mom never did pumpkin pie, but I’ve always said that her chocolate bourbon pecan pie is one of my all-time favorites. It’s all about that gooey filling and sweet chocolate. Gets me every time.
And that brings me to these cupcakes. They’re everything I love about my mom’s pecan pie, but in the form of a cute chocolate cupcake.

The history on these cupcakes…
This is a recipe I shared a long, long time ago. It’s been a favorite ever since, but I hadn’t made them in a while. Actually, since 2013, so quite a longggg while.
With things being so crazy this holiday season, I wanted to make our Thanksgiving extra special and really pull out all the stops. Somehow that lead me back to these cupcakes. Once I had the idea to make these, I knew I needed to get the recipe perfect before sharing. I spent a few days testing and retesting and I’m pretty excited to share the final product with you guys.
These cupcakes are GOOD. The kind you’ll have a hard time not going back and grabbing a second. They’re made rich and flavorful with a good splash of bourbon, the pecan pie filling is gooey, and swirled with toasted pecans, and the brown sugar frosting? Well, it definitely seals the deal.

The details.
I’m going to get this out there, these cupcakes require some time to prepare and do have a few steps. But they’re no harder than baking up your own pie. So while the recipe is longer, don’t let that scare you. You can easily make these!
I like to start with the pecan pie filling. Basically, this is pecan pie filling, but instead of it being in pie crust, it’s in the cupcake. Making it is kind of like making pudding. Just mix eggs with cornstarch, add brown sugar and maple syrup, then thicken it up on the stove. Then stir in cinnamon-spiced bourbon pecans and now you have your pecan pie “filling”. Also known as pecan pie, cooked on the stove, and minus the pie crust.

Once you have the filling made, bake the cupcakes. And guys? These are extra special cupcakes. It’s all about the bourbon which really helps to highlight the rich, sweet chocolate. Originally, I used a full cup of bourbon, but I felt that it was just a smidge overpowering. So I took the bourbon down a bit and came out with the perfect chocolate cupcake that has subtle notes of bourbon. So delicious.
Each cupcake is incredibly moist, so soft, and perfectly sweetened. The flavor truly comes from the bourbon.
The bourbon pecan pie filling is so gooey and delicious. Over time the filling begins to seep into the cupcake and create the moistest, most flavorful chocolate cupcake with a pecan center. They’re roll your eyes back delicious!

On to the butter pecan frosting…
This frosting is everything and has to be one of my favorites. I drew inspiration from a few of my older recipes, but especially from these sweet brown sugar cookies, and also these butter pecan frosted fudge brownies. And more recently, my chai pumpkin cupcakes.
There are two simple secrets to this frosting…
One, use a mix of brown sugar and powdered sugar. Powdered sugar adds practically zero flavor. The brown sugar adds hints of warm molasses and really deepens the flavor to create a frosting that’s perfectly rich and sweet.
The second secret…vanilla, and sweet cinnamon bourbon spiced pecans swirled throughout. SO GOOD. Think creamy, buttery, and hinted with brown sugar, vanilla, and filled with nutty pecans. Honestly? you’ll want to slather on more than you think your cupcakes will actually need. You may even want to think about doubling that frosting.

Now, stuff, frost, decorate…and eat.
I didn’t do anything fancy here. I stuffed the pecan pie filling into the center of each cupcake. Then simply dolloped a generous swirl of the brown sugar frosting overtop. Then I finished with those yummy toasted pecans.
And that’s it. Not the simplest, but worth every bit of extra effort. And so very good. Each bite is filled with sweet chocolate cupcake, gooey pecan pie filling, light, fluffy frosting, and bourbon-glazed pecans.
Oh my gooosssh, SO amazing.
These will make the perfect Thanksgiving cupcakes! My best advice is to bake these up this weekend. You’ll need to test out the recipe before Thanksgiving Day. Then take the extras to neighbors to share and make again for Thanksgiving next week. By the second round, you’ll have the process perfected and plenty of delicious cupcakes to enjoy!
Make-Ahead, Storage & Freezing
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Bake ahead: Cupcakes hold well unfrosted at room temp (covered) for a day; frost day-of for best texture.
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Store: Frosted cupcakes keep covered in the fridge; bring to room temp before serving for the softest crumb.
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Freeze: Freeze unfrosted cupcakes and frosting separately; thaw cupcakes overnight and re-whip frosting if needed.
FAQ:
Can I make these without bourbon?
Yes—swap in strong coffee plus a splash of vanilla. You’ll keep warmth and complexity, just less of that classic bourbon depth.
How do I know the cupcakes are done?
Look for lightly domed tops that spring back and a toothpick with a few moist crumbs. If it’s wet batter, bake a touch longer.
How can I toast the pecans without burning them?
Toast in a dry skillet, stirring, until fragrant and a shade deeper; cool completely before adding so they don’t melt the frosting.
Can I bake ahead for Thanksgiving?
Bake cupcakes a day ahead and store covered; frost closer to serving. Freeze unfrosted for longer storage and thaw overnight for best texture .

Looking for other Thanksgiving desserts?? Here are my favorites:
Gooey Chocolate Chip Cookie Pie
Brown Sugar Maple Chocolate Pecan Pie Bars
Lastly, if you make these Chocolate Bourbon Pecan Pie Cupcakes with Butter Pecan Frosting, be sure to leave a comment and/or give this recipe a rating! Above all, I love to hear from you guys and always do my best to respond to each and every comment. And of course, if you do make this recipe, don’t forget to tag me on Instagram! Looking through the photos of recipes you all have made is my favorite!
Chocolate Bourbon Pecan Pie Cupcakes with Butter Pecan Frosting.
Servings: 20
Calories Per Serving: 487 kcal
Nutritional information is only an estimate. The accuracy of the nutritional information for any recipe on this site is not guaranteed.
Ingredients
Pecan Pie Filling
- 3 cups raw pecans
- 2 tablespoons bourbon
- 3 teaspoons vanilla extract
- 1/2 cup + 2 tablespoons packed light or dark brown sugar
- 1/2 teaspoon ground cinnamon
- 4 large egg yolks
- 1/4 cup cornstarch
- 3/4 cup real maple syrup
Bourbon Chocolate Cupcakes
- 1 cup melted coconut oil
- 1/2 cup bourbon (see notes)
- 1/2 cup strong black coffee or water
- 2 large eggs, at room temperature
- 2/3 cup plain greek yogurt, at room temperature
- 1 cup granulated sugar
- 2 cups all-purpose flour
- 3/4 cup unsweetened cocoa powder
- 1 1/2 teaspoons baking soda
- 3/4 teaspoon kosher salt
Butter Pecan Frosting:
- 2 sticks (16 tablespoons) salted butter, at room temperature
- 1/2 cup heavy cream
- 1 cup packed brown sugar
- 1 tablespoon vanilla extract
- 3 cups powdered sugar
Instructions
- 1. To make the pecan pie filling. Preheat oven to 350° F. Line a baking sheet with parchment paper. On the baking sheet, combine the pecans, 2 tablespoons bourbon, 1 teaspoon vanilla, 2 tablespoons brown sugar, and the cinnamon. Bake 8-10 minutes, until toasted. Sprinkle with sea salt. Roughly chop the pecans, reserving 22 whole pecans for topping.2. In a large pot, whisk together the egg yolks, cornstarch and 1 tablespoon water until fully combined. Add 1/2 cup brown sugar, the maple syrup, and a pinch of salt. Set the pot over medium-high heat and bring the mixture to a boil. Cook, stirring continuously, until the mixture thickens, about 5-8 minutes. Remove from the heat. Strain through a fine mesh sieve into a heat proof bowl. Stir in about 1 cup of the chopped pecans and 2 teaspoons vanilla. Transfer to a bowl, cover, and chill in the fridge until set, about 1 hour. 3. Meanwhile, make the cupcakes. Preheat oven to 350° F. Line 20-22 cupcake molds with paper liners.4. In the bowl of a stand mixer (or use a hand-held mixer) beat together the coconut oil, bourbon, coffee/water, eggs, yogurt, and sugar until combined. Add the flour, cocoa powder, baking soda, and salt. Mix until smooth and no lumps remain in the batter.4. Divide the batter evenly among the prepared pan. Transfer to the oven and bake 18-22 minutes, until the tops are just set, and no longer wiggly in the center. Remove and let cool.5. To make the frosting, melt together 4 tablespoons butter, the cream, and brown sugar in a medium saucepan. Bring to a boil and cook for one minute or until the sugar has dissolved. Remove from the heat and add to the bowl of a stand mixer. Place the bowl in the freezer (or fridge for longer) for 15-20 minutes or until cool to touch.6. Grab the cooled butter mixture from the freezer and add the remaining 12 tablespoons of butter, 1 tablespoon vanilla, and the powdered sugar to the bowl. Beat together until well combined. Stir in 1/2-1 cup of the finely chopped toasted pecans. 7. Using a paring knife, cut a cone-shaped piece from the center of each cupcake. Fill the hole with the cooled pecan pie filling. Frost each cupcake and sprinkle with the remaining pecans. Top each with the reserved whole pecans.
Notes
For an Intense Bourbon Flavor: If you want a cupcake that really tastes like a good shot of bourbon, use 1 cup bourbon and omit the coffee. This is an especially delicious cupcake with strong hints of bourbon.
For a Mild Bourbon Flavor: For less bourbon, use 1/4 cup bourbon and 3/4 cup coffee/water.
Can You Serve These To Kids? Yes the alcohol cooks out while baking. Asher loves these! If baking with 1 cup of bourbon, however, I would not serve to kids as they will taste the bourbon.

This post was originally published on November 20, 2020
















Is the greek yogurt plain or vanilla?
Hi Brandy! I use plain Greek yogurt. Please let me know if you have any other questions. I hope you love this recipe! Thank you! xTieghan
Would it be okay to sub some or all of the cocoa powder for black cocoa? I love dark, Oreo-esque color and flavor but cocoa powder + leavening stuff is a mystery to me!
Hey Stacy! That will leave you with a very dark and rich cupcake. If you enjoy that flavor, then I am sure it will be great!! Please let me know if you have any other questions. I hope you love this recipe! Thank you! xTieghan ??
These cupcakes are amazing! Made these for my mom’s birthday and just wow!! Definitely boozy and they take a little time and preparation but so worth it. Tieghan, your recipes are always so good and I cant wait to keep trying them. Oh, also (im)patiently awaiting the arrival of your next cookbook! ?
That is so amazing to hear Brittany! Thank you so much! xTieghan
Ok, so, I saw this recipe posted on your Best of Fall list today and I realized I’ve made these cupcakes every year for almost SIX YEARS now and I never remembered to comment. So yeah: THESE ARE AMAZING CUPCAKES. These are, like, Special Occasion, Get Your Fall ON cupcakes. I made these once and I never looked back. I have REQUESTS for these every November. These are not something you can just conjure up quick, but they are SO worth it. I’m not even good at baking and I manage to make magic with these. I consider this on my own personal Half Baked Harvest ‘classics’ list, right next to pretty much any of your chicken bowls and ALL the seasonal enchiladas (which omg why were those not on that fall list?!). Anyway, anyone reading these comments, MAKE THESE CUPCAKES!!
Ok wow that is SO amazing!! I am so glad you have been loving these Elle! Thank you!! xTieghan
I just made a big batch of these for my coworkers…. and they were a smash hit! These are some good freaking cupcakes. The only thing I had trouble with was getting my frosting to look like the picture. I didn’t know until later that you had to whip the butter for a long time to get it to fluff up like that. I had to add cornstarch to get it solid enough to stay on, but in th he end it the frosting still looked good and tasted great. I will be making again for the holidays.
Thank you so much Ashley! I am so glad you all loved these! xTieghan
I made these cupcakes and they were delicious. But, I did have trouble with the filling. Even though I whisked it continuously, the eggs curdled and I had to throw out the first batch. The second time, I did it under medium low heat, again whisking it continuously, and I still wasn’t happy with the texture. Can’t imagine what I’m doing wrong. The frosting with candied pecans is fabulous.
These cupcakes are fabulous!! My family loves them! The only issue I have is that the icing is a little too runny even after putting it back into the freezer and whipping it a few seconds, as suggested in the recipe. I would love to take these to family gatherings, but I’m afraid they won’t travel well and the icing could possible melt. Do you have any other suggestions?
Hi Cathy! I would recommend adding an additional 1/2 to 1 cup of powdered sugar. This should help to stiffen the frosting. Also, as the frosting sits, it should firm up with time! Please let me know if you have any other questions. I am so glad you love this recipe! Thank you! xTieghan
That looks simply delicious. Gonna try that soon. thanks for the recipe.
Thank you so much Jiya! xTieghan
Lots of people are commenting on this one. I can see why! Chocolate, bourbon, and pecans is usually a great combination. These are tasty little things and the butter pecan frosting is good on anything. Don’t forget to lick the bowl.
Yes yes yes! I hope you love this pie if you get the chance to make it! Thank you Millican! xTieghan
I am making this today for the 3rd time. it’s delicious! I was just wondering what’s the best way to store these cupcakes? In the fridge?
Hey Betty1! I actually like to store these on the counter in an air-tight container for up to 3-4 days. Please let me know if you have any other questions. I hope you love this recipe! Thank you! xTieghan
Yummy!Yummy! It looks sooo delicious. It must try it on my weekend.
Thank you so much Anushka! I hope you love this! xTieghan
Hi Tieghan! I’m wondering if I can make these as mini cupcakes? Would I need to change anything??
HI! Mini cupcakes might be a little tedious, but I am sure it would work fine! I would bake them 5-10 minutes less. Please let me know if you have any other questions. I hope you love this recipe! Thank you! xTieghan
Recipe is confusing
Hi Jane! Sorry about that. Is there a specific section I can help you with or any questions I can answer?
My dad is a whisky lover and my friend made these for Christmas a couple years ago and he loves them!! I am an ameture baker at best lol but these were not to hard for even me!! I thought about making them today on Christmas Eve for him I realized I have everything but the heavy cream in the frosting. Can I sub 2% milk or buttermilk which I have??
Can you refrigerate the filling over night?
Yes, you can! Please let me know if you have any other questions. I hope you love this recipe. Thanks so much!! xTieghan ?