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Chipotle Beef Sweet Potato Skins — with all the toppings, of course. These baked sweet potato skins stuffed with smoky chipotle beef (or chicken, if you prefer) and melty cheddar cheese. Finish with homemade bacon bits, then all your favorite toppings. Perfect for an easy family dinner or game night with friends — these have quickly become a tried-and-true favorite.

Chipotle Beef Sweet Potato Skins - halfbakedharvest.com

I’ve always loved potato skins. I think it’s a Midwest thing, but growing up, my dad made them all the time in the fall and winter. He’d use russet potatoes, load them up with cheddar and bacon bits (his came straight from a plastic container — I prefer homemade), and serve them with big dollops of sour cream. My mom and I would eat every last one. So simple, but honestly? Any cheesy potato is just YUM.

Today’s recipe feels both new and nostalgic. A few months ago, I started making stuffed sweet potatoes for dinner, and my family has gotten hooked. Sweet potatoes have extra fiber, a gentler blood sugar impact, and a huge boost of vitamin A and antioxidants over regular potatoes. So I find myself using them much more often.

Chipotle Beef Sweet Potato Skins - halfbakedharvest.com

I made these skins one night last winter when the whole family was home for the holidays. I made a lot — and every single one disappeared fast. My oldest brother, Creighton, especially loves them. Now they’re one of the most requested dinners in our house (nothing will ever win over tacos!).

As we head into October, these cozy, slightly smoky sweet potato skins are perfect for family nights in or casual game-night snacking with friends. Just be sure to make a big tray, they’ll go fast!

Chipotle Beef Sweet Potato Skins - halfbakedharvest.com

Here are the details

Ingredients

  • sweet potatoes
  • ground beef – or use venison, bison, or ground chicken
  • onions
  • chili powder
  • chipotle chile powder
  • smoked paprika
  • garlic powder
  • cumin
  • tomato paste
  • hot sauce
  • cheddar and monterey jack cheese

The Toppings 

  • bacon bits – a must for me personally
  • avocado
  • cilantro and or green onions
  • pickled jalapeños
  • plain Greek yogurt or sour cream

Special Tools

I use a 12 inch skillet and a sheet pan for this recipe.

Chipotle Beef Sweet Potato Skins - halfbakedharvest.com

Steps

Step 1: Cook the sweet potatoes

Choose sweet potatoes that are on the wider side if you can (more room for all the toppings!). Bake them directly on the oven rack until just tender but still holding their shape. Once cool enough to handle, slice each in half and scoop out most of the orange flesh, leaving a nice border inside the skins so they stay sturdy.

Chipotle Beef Sweet Potato Skins - halfbakedharvest.com

Step 2: Cook the meat

Brown the ground beef with the onion in a skillet, just like making tacos. If using very lean beef, add a little butter for richness. Season with chili powder, chipotle, smoked paprika, garlic powder, and cumin. Stir in the tomato paste, a splash of hot sauce, and some water; simmer until the water has cooked away and the beef is tender and flavorful. Taste and add salt and pepper. (You can mix in black beans here if you like — I usually skip them.)

Chipotle Beef Sweet Potato Skins - halfbakedharvest.com

Step 3: Stuff the sweet potatoes

Arrange the potato skins on a baking sheet. Spoon the beef mixture evenly into each one, then top generously with a mix of cheddar and Monterey Jack cheese.

Step 4: Bake

Return the tray to the oven and bake until the skins are crisp and the cheese is fully melted and bubbly.

Chipotle Beef Sweet Potato Skins - halfbakedharvest.com

The toppings + serving

While those are cooking, gather up your toppings. As I’ve mentioned, crispy homemade bacon bits are a must. And I always use some plain Greek yogurt with lots of cilantro.

Diced-up avocado is also pretty great — almost like sweet potato nachos!

As soon as you take the skins out of the oven, top them with bacon bits, then add each and every topping you enjoy most. That’s it!

Chipotle Beef Sweet Potato Skins - halfbakedharvest.com

Pro Tip:
If you want to prep ahead, bake and scoop the sweet potatoes, then cook the beef filling earlier in the day. Assemble the skins but wait to bake them until just before serving. That way the skins stay crisp and the cheese gets perfectly melty right out of the oven!

Looking for more fun recipes? Here are a few to try:

Sheet Pan Buffalo Chicken Pizza

Spinach and Artichoke Stuffed Soft Pretzels

Fried Buffalo Goat Cheese Balls

Baked Buffalo Chicken Egg Rolls with Cilantro Lime Ranch

Chipotle Chicken Nachos with Jalapeño Yogurt

Lastly, if you make these Loaded Chipotle Beef Sweet Potato Skins, be sure to leave a comment and/or give this recipe a rating! Above all, I love to hear from you guys and always do my best to respond to each and every comment. And of course, if you do make this recipe, don’t forget to tag me on Instagram! Looking through the photos of recipes you all have made is my favorite!

Loaded Chipotle Beef Sweet Potato Skins

Prep Time 20 minutes
Cook Time 1 hour 15 minutes
Total Time 1 hour 35 minutes
Servings: 6
Calories Per Serving: 529 kcal

Nutritional information is only an estimate. The accuracy of the nutritional information for any recipe on this site is not guaranteed.

Instructions

  • 1. Preheat the oven to 425° F. Prick the sweet potatoes with a fork. Bake directly on the rack until tender, 35-40 minutes. Slice in half, then let cool.
    2. Meanwhile, cook the beef and onion in a large skillet until browned all over. Add the chili powder, chipotle, paprika, garlic powder, and cumin. Season with salt and pepper. Mix in the tomato paste. Add the hot sauce and 1/3 cup water. Cook another 5 minutes, then remove from the heat.
    3. Use a fork to scoop most of the flesh out of the sweet potatoes, leaving about 1/4 inch of the sweet potato in the skins. Arrange the skins on a parchment-lined baking sheet and evenly stuff with the beef. Add the cheeses.
    4. Bake 15-20 minutes, until the cheese is melted.
    5. Serve immediately, topped with lots of bacon bits and an assortment of your favorite toppings. We love mashed avocado, Greek yogurt/sour cream, green onion, cilantro, and candied jalapeños. ENJOY!
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This post was originally published on September 25, 2025
5 from 6 votes

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Comments

  1. 5 stars
    This was so good and so easy. I have little ones, so instead of hot sauce I did a homemade barbecue sauce. I will be making this again.
    Your recipes are the best and are always a part of my rotation!

    1. Hey Lindsey,
      Thanks so much! Love to hear you enjoyed this recipe, I appreciate you making it! Have a great day!

  2. What do you do with the flesh of the sweet potato that you scoop out? Add it back in somewhere? Freeze it? Compost it?
    Thanks!!

    1. Hi Eridana,
      I usually save it to use for another recipe. You could totally freeze it too! Please let me know if you have any other questions!

  3. 5 stars
    This is sooo good! Perfect fall meal. It’s spicy, sweet, and salty. I baked my bacon to make my own bacon bits. I added mikes hot honey and it was chef kiss! Thanks for the delicious recipe. This is def a keeper.

    1. Hey Kerri,
      Happy Monday! I appreciate you trying this recipe and your feedback, love to hear it turned out well!

  4. 5 stars
    We LOVED this recipe! It was like a flavor bomb going off in our mouths! The only difference I did was that I used the whole sweet potato and made a, “bowl”! YUM!

    1. Hey Viviane,
      Yay!! Thanks so much for trying this recipe and sharing your feedback, so glad it was enjoyed! Happy fall Sunday!

    1. Hey Joyce,
      Love to hear this recipe turned out nicely for you, thanks for making it and your comment! Have the best fall weekend!

  5. These look great! You mentioned stuffed sweet potatoes. Do you treat a stuffed sweet potato just like a regular baking potato, or are there any particular toppings you’ve tried? I’m dreaming up a stuffed sweet potato with like a sloppy joe style topping. Yum.

    1. Hey Sarah,
      Thanks so much! Yes, just like a regular stuffed baked potato with all the fixings! Sloppy Joe style sounds delicious. Let me know if you give these skins a try!

  6. What do you do with the sweet potato you scoop out? Do you toss it in the trash? I hate to waste food, especially healthy food, especially when groceries are so expensive.